Processing functional near infrared spectroscopy (fNIRS) and diffuse optical tomography (DOT) data poses several challenges including costly software licenses (e.g. MATLAB) and compatibility between a wide variety of data formats (NIRS, SNIRF, BIDS, NIFTI, 4dfp, GIFTI, etc.). NeuroDOT is a toolbox available in both MATLAB and Python that has functions and pipelines for data preprocessing, anatomical light modeling, image reconstruction, analysis, and visualization. NeuroDOT’s standard pipelines provide a self-contained, straightforward method of processing and analysis for fNIRS and DOT data. Additionally, NeuroDOT utilizes cloud-based computing with XNAT to lessen computational burden, promote reproducibility of results, and simplify processing.
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