The Neurophotonics Special Series on Open-Source Tools and Techniques is published in Neurophotonics Volumes 10 - 11. The articles are collected here.

Special Guest Editorial: Open-source neurophotonic tools for neuroscience

Suhasa B. Kodandaramaiah, Daniel Aharoni, and Emily A. Gibson

Computer vision guided open-source active commutator for neural imaging in freely behaving animals

Ibrahim Oladepo, Kapil Saxena, Daniel Surinach, Malachi Lehman, and Suhasa B. Kodandaramaiah

OpenSTED: open-source dynamic intensity minimum system for stimulated emission depletion microscopy

Stephanie A. Pierce, Jordan Jacobelli, Katherine S. Given, Wendy B. Macklin, Juliet T. Gopinath, Mark E. Siemens, Diego Restrepo, and Emily A. Gibson

Widefield in vivo imaging system with two fluorescence and two reflectance channels, a single sCMOS detector, and shielded illumination

Patrick R. Doran, Natalie Fomin-Thunemann, Rockwell P. Tang, Dora Balog, Bernhard Zimmerman, Kıvılcım Kılıç, Emily A. Martin, Sreekanth Kura, Harrison P. Fisher, Grace Chabbott, Joel Herbert, Bradley C. Rauscher, John X. Jiang, Sava Sakadzic, David A. Boas, Anna Devor, Ichun Anderson Chen, and Martin Thunemann

Three-dimensional infrared scanning: an enhanced approach for spatial registration of probes for neuroimaging

András Bálint, Christian Rummel, Marco Caversaccio, and Stefan Weder

Modulation of neuronal dynamics by sustained and activity-dependent continuous-wave near-infrared laser stimulation

Alicia Garrido-Peña, Pablo Sanchez-Martin, Manuel Reyes-Sanchez, Rafael Levi, Francisco B. Rodriguez, Javier Castilla, Jesus Tornero, and Pablo Varona

Comprehensive software suite for functional analysis and synaptic input mapping of dendritic spines imaged in vivo

Yiyi Yu, Liam Adsit, and Ikuko Smith

Low-cost reversible tandem lens mesoscope for brain imaging in rodents

Ashly Jose, Pang Ying Cheung, Zahra Laouby, Frédérique Vanholsbeeck, and Juliette E. Cheyne

FiPhA: an open-source platform for fiber photometry analysis

Matthew F. Bridge, Leslie R. Wilson, Sambit Panda, Korey D. Stevanovic, Ayland C. Letsinger, Sandra McBride, and Jesse D. Cushman

Advances in cellular resolution microscopy for brain imaging in rats

Su Jin Kim, Rifqi Affan, Hadas Frostig, Benjamin Scott, and Andrew Alexander

Evaluation of compact pulsed lasers for two-photon microscopy using a simple method for measuring two-photon excitation efficiency

Samir Saidi and Matthew Shtrahman

Pupil engineering for extended depth-of-field imaging in a fluorescence miniscope

Joseph Greene, Yujia Xue, Jeffrey Alido, Alex Matlock, Guorong Hu, Kivilcim Kiliç, Ian Davison, and Lei Tian