Dr. Junyu Chen Profile

Dr. Junyu Chen

at Johns Hopkins Univ.

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Publications (3)

Proceedings Article | 2 April 2024 Presentation + Paper

Is registering raw tagged-MR enough for strain estimation in the era of deep learning? (Image Processing Best Student Paper Award)

Zhangxing Bian, Ahmed Alshareef, Shuwen Wei, Junyu Chen, Yuli Wang, Jonghye Woo, Dzung Pham, Jiachen Zhuo, Aaron Carass, Jerry Prince

Proceedings Volume 12926, 129260A (2024) https://doi.org/10.1117/12.3006906

KEYWORDS: Deformation, Anatomy, Magnetic resonance imaging, Deep learning, Motion estimation, Motion measurement, Image registration

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SPIE Journal Paper | 28 January 2021

DeepAMO: a multi-slice, multi-view anthropomorphic model observer for visual detection tasks performed on volume images

Ye Li, Junyu Chen, Justin Brown, S. Ted Treves, Xinhua Cao, Frederic Fahey, George Sgouros, Wesley Bolch, Eric Frey

JMI, Vol. 8, Issue 04, 041204, (January 2021) https://doi.org/10.1117/12.10.1117/1.JMI.8.4.041204

KEYWORDS: 3D modeling, Performance modeling, Image segmentation, Data modeling, Defect detection, 3D image processing, Computer simulations, Image processing, Composites, Kidney

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Purpose: We propose a deep learning-based anthropomorphic model observer (DeepAMO) for image quality evaluation of multi-orientation, multi-slice image sets with respect to a clinically realistic 3D defect detection task. Approach: The DeepAMO is developed based on a hypothetical model of the decision process of a human reader performing a detection task using a 3D volume. The DeepAMO is comprised of three sequential stages: defect segmentation, defect confirmation (DC), and rating value inference. The input to the DeepAMO is a composite image, typical of that used to view 3D volumes in clinical practice. The output is a rating value designed to reproduce a human observer’s defect detection performance. In stages 2 and 3, we propose: (1) a projection-based DC block that confirms defect presence in two 2D orthogonal orientations and (2) a calibration method that “learns” the mapping from the features of stage 2 to the distribution of observer ratings from the human observer rating data (thus modeling inter- or intraobserver variability) using a mixture density network. We implemented and evaluated the DeepAMO in the context of Tc99m-DMSA SPECT imaging. A human observer study was conducted, with two medical imaging physics graduate students serving as observers. A 5 × 2-fold cross-validation experiment was conducted to test the statistical equivalence in defect detection performance between the DeepAMO and the human observer. We also compared the performance of the DeepAMO to an unoptimized implementation of a scanning linear discriminant observer (SLDO). Results: The results show that the DeepAMO’s and human observer’s performances on unseen images were statistically equivalent with a margin of difference (ΔAUC) of 0.0426 at p < 0.05, using 288 training images. A limited implementation of an SLDO had a substantially higher AUC (0.99) compared to the DeepAMO and human observer. Conclusion: The results show that the DeepAMO has the potential to reproduce the absolute performance, and not just the relative ranking of human observers on a clinically realistic defect detection task, and that building conceptual components of the human reading process into deep learning-based models can allow training of these models in settings where limited training images are available.

Proceedings Article | 15 March 2019 Paper

Incorporating CT prior information in the robust fuzzy C-means algorithm for QSPECT image segmentation

Junyu Chen, Abhinav Jha, Eric Frey

Proceedings Volume 10949, 109491W (2019) https://doi.org/10.1117/12.2506805

KEYWORDS: Image segmentation, Bone, Computed tomography, Single photon emission computed tomography, Image processing algorithms and systems, Fuzzy logic, 3D image processing

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