Prof. Jonathan C. Petruccelli Profile

Prof. Jonathan C. Petruccelli

Associate Professor at Univ at Albany

SPIE Involvement:

Author | Editor

Publications (31)

Proceedings Article | 1 April 2024 Poster + Paper

Phase and dark field tomography with structured illumination

Wadiah Allahyani, Arthur Redgate, Carolyn MacDonald, Jonathan Petruccelli

Proceedings Volume 12925, 129253P (2024) https://doi.org/10.1117/12.3006898

KEYWORDS: Phase imaging, Computational imaging, Signal attenuation, Fourier transforms, Image processing, X-ray imaging, Scattering, X-rays, Tomography, X-ray computed tomography

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Proceedings Article | 12 March 2024 Presentation + Paper

Measuring methamphetamine induced morphology changes in apoptotic glial cells using the transport of intensity equation, digital holographic microscopy, and diffraction tomography

Shane Carney, Alireza Sheikhsofla, Ting Chean Khoo, Samaneh Ghazanfarpour, Monireh Pourrahimi, Arthur Redgate, Stephen Rose, Madison Torres, Anna Sharikova, Supriya Mahajan, Jonathan Petruccelli, Alexander Khmaladze

Proceedings Volume 12854, 128540I (2024) https://doi.org/10.1117/12.3003357

KEYWORDS: Cell death, Digital holography, Optical path differences, Holography, Phase imaging, Microscopy, Diffraction

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Proceedings Article | 12 March 2024 Presentation + Paper

Label-free detection and characterization of cytochrome-c in human microglial cells (HTHμ) during apoptosis via Raman spectroscopy

Alireza Sheikhsofla, Monireh Pourrahimi, Samaneh Ghazanfarpour, Shane Carney, Pampa Mandal DeNivo, Anna Sharikova, Supriya Mahajan, Jonathan Petruccelli, Alexander Khmaladze

Proceedings Volume 12854, 128540M (2024) https://doi.org/10.1117/12.3003771

KEYWORDS: Cell death, Raman spectroscopy, Singular value decomposition, Mitochondria, Proteins, Matrices, Control systems, Biological samples, Imaging systems, Signal detection

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Proceedings Article | 21 June 2023 Presentation + Paper

Dark field signal maximization in mesh-based x-ray imaging

Uttam Pyakurel, C. MacDonald, Jonathan Petruccelli

Proceedings Volume 12523, 125230B (2023) https://doi.org/10.1117/12.2665366

KEYWORDS: Signal to noise ratio, Imaging systems, X-ray imaging, X-rays, Diamond, Signal detection, Phase contrast, Signal attenuation, Deblurring, X-ray optics

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Proceedings Article | 14 June 2023 Presentation + Paper

Initial investigation of mesh-based x-ray phase tomography

Wadiah Allahyani, Uttam Pyakurel, Arthur Redgate, Carolyn MacDonald, Jonathan Petruccelli

Proceedings Volume 12523, 125230C (2023) https://doi.org/10.1117/12.2665371

KEYWORDS: X-rays, X-ray imaging, Phase reconstruction, Tomography, Imaging systems, Image processing, X-ray computed tomography

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Proceedings Article | 27 May 2022 Paper

The study of cell death mechanisms via simultaneous Raman and transport of intensity phase-imaging techniques

Shane Carney, Ting Chean Khoo, Jonathan Barra-Carrasco, Samaneh Ghazanfarpour, Shahab Bahreini, Anna Sharikova, Margarida Barroso, Supriya Mahajan, Jonathan Petruccelli, Alexander Khmaladze

Proceedings Volume 12144, 121440A (2022) https://doi.org/10.1117/12.2622411

KEYWORDS: Raman spectroscopy, Cell death, Breast cancer, Microscopes, Integrated optics, Digital holography, Tissues, Temporal coherence, Spectroscopy, Phase measurement

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Proceedings Article | 2 March 2022 Presentation + Paper

Quantitative volume comparisons of methamphetamine-induced apoptosis by simultaneous digital holographic microscopy and transport of intensity phase-imaging techniques

Shane Carney, Ting Chean Khoo, Kate Tubbesing, Anna Sharikova, Supriya Mahajan, Jonathan Petruccelli, Alexander Khmaladze

Proceedings Volume 11972, 119720B (2022) https://doi.org/10.1117/12.2610394

KEYWORDS: Cell death, Digital holography, Microscopy, Microscopes, Holography, Beam splitters, Cameras, Objectives, Mirrors

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Proceedings Article | 15 February 2021 Presentation + Paper

Incorporating dark-field information in mesh-based x-ray phase imaging

Uttam Pyakurel, Desirée D'Moore, Pikting Cheung, Bushra Kanwal, Xiaoyun Zhang, C. MacDonald, Jonathan Petruccelli

Proceedings Volume 11595, 115951M (2021) https://doi.org/10.1117/12.2582192

KEYWORDS: X-rays, X-ray imaging, Phase imaging, Phase contrast, Coherence (optics), Absorption

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Proceedings Article | 15 February 2021 Poster + Paper

Quantitative phase retrieval simulation for mesh-based x-ray phase imaging systems

Laila Hassan, Weiyuan Sun, Carolyn MacDonald, Jonathan Petruccelli

Proceedings Volume 11595, 115954P (2021) https://doi.org/10.1117/12.2582175

KEYWORDS: X-rays, X-ray imaging, Phase imaging, Imaging systems, Phase retrieval, Systems modeling, Sensors, Sensor performance, Computing systems, Coherence (optics)

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Proceedings Article | 19 May 2020 Paper

Development of simulations for a mesh-based x-ray phase imaging system

Laila Hassan, Uttam Pyakurel, Weiyuan Sun, Carolyn MacDonald, Jonathan Petruccelli

Proceedings Volume 11396, 113960E (2020) https://doi.org/10.1117/12.2558926

KEYWORDS: X-rays, X-ray imaging, Phase imaging, Imaging systems, Ray tracing, Fourier transforms, Phase contrast, X-ray sources

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Proceedings Article | 16 March 2020 Paper

Phantom measurements with a mesh-based phase system employing polycapillary optics

Uttam Pyakurel, Desirée D'Moore, Pikting Cheung, Bushra Kanwal, Xiaoyun Zhang, C. MacDonald, Jonathan Petruccelli

Proceedings Volume 11312, 1131255 (2020) https://doi.org/10.1117/12.2549359

KEYWORDS: Image processing, Image resolution, Phase imaging, Absorption, Fourier transforms, Imaging systems

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Proceedings Article | 16 March 2020 Paper

Development of simulations for a mesh-based x-ray phase imaging system

Laila Hassan, Weiyuan Sun, Carolyn MacDonald, Jonathan Petruccelli

Proceedings Volume 11312, 1131253 (2020) https://doi.org/10.1117/12.2549358

KEYWORDS: Image processing, X-rays, X-ray imaging, Imaging systems, Fourier transforms, Phase imaging, Absorption, Cameras

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Proceedings Article | 20 February 2020 Presentation + Paper

Digital holographic microscopy (DHM) and transport of intensity (TIE) phase imaging of live cells

Shane Carney, Ting Chean Khoo, Jeremy Wittkopp, Kai Pisila, Georgios Athanassiadis, Anna Sharikova, Alexander Khmaladze, Jonathan Petruccelli

Proceedings Volume 11251, 1125122 (2020) https://doi.org/10.1117/12.2547934

KEYWORDS: Digital holography, Phase imaging, Holography, Microscopy, Diffraction, Microscopes

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Proceedings Article | 13 May 2019 Presentation + Paper

Propagation-based and mesh-based x-ray quantitative phase imaging with conventional sources

Weiyuan Sun, Carolyn MacDonald, Jonathan Petruccelli

Proceedings Volume 10990, 109900U (2019) https://doi.org/10.1117/12.2520756

KEYWORDS: Phase imaging, X-ray imaging, X-rays, Image resolution, Phase measurement, Coherence (optics), Phase contrast

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Proceedings Article | 1 March 2019 Presentation + Paper

Low dose imaging with simultaneous scatter, attenuation and mesh-based phase contrast

Rohaan Khan, Brenda Adhiambo, Sean Starr-Baier, Laila Hassan, Weiyuan Sun, Danhong Li, C. MacDonald, Jonathan Petruccelli

Proceedings Volume 10948, 109481T (2019) https://doi.org/10.1117/12.2512748

KEYWORDS: Tissues, Signal attenuation, X-ray imaging, Absorption, Coherence imaging, Image resolution, X-rays, Imaging systems, Phase contrast, Mammography, X-ray diffraction

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Proceedings Article | 1 March 2019 Paper

Mesh-based and polycapillary optics-based x-ray phase imaging

Weiyuan Sun, Congxiao He, Carolyn MacDonald, Jonathan Petruccelli

Proceedings Volume 10948, 109484U (2019) https://doi.org/10.1117/12.2512628

KEYWORDS: Phase imaging, Image resolution, X-ray optics, X-ray imaging, X-rays, Signal attenuation, Absorption, Signal to noise ratio, Digital mammography

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Proceedings Article | 14 May 2018 Presentation + Paper

Computational resolution enhancement for mesh-based x-ray phase imaging

Congxiao He, Danielle Hayden, Carolyn MacDonald, Jonathan Petruccelli

Proceedings Volume 10669, 106690Q (2018) https://doi.org/10.1117/12.2305097

KEYWORDS: Image resolution, Image processing, X-ray imaging, X-rays, Phase imaging, Fourier transforms, Resolution enhancement technologies, Spatial resolution

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Proceedings Article | 14 May 2018 Presentation + Paper

Propagation-based x-ray phase imaging using focusing polycapillary optics

Weiyuan Sun, Carolyn MacDonald, Jonathan Petruccelli

Proceedings Volume 10669, 106690P (2018) https://doi.org/10.1117/12.2305092

KEYWORDS: X-ray imaging, X-rays, Phase imaging, X-ray optics, Phase contrast, Geometrical optics

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Proceedings Article | 14 May 2018 Presentation

New systems for computational x-ray phase imaging with conventional sources (Conference Presentation)

Jonathan Petruccelli, Porcelain He, Weiyuan Sun, Danielle Hayden, Sean Starr-Baier, Carolyn MacDonald

Proceedings Volume 10656, 106560V (2018) https://doi.org/10.1117/12.2307721

KEYWORDS: X-ray imaging, X-rays, Phase imaging, Imaging systems, Computing systems, Signal attenuation, Refractive index, Tissues, Spatial coherence, Synchrotron x-ray imaging

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Proceedings Article | 14 May 2018 Presentation

X-ray phase and coherent scatter imaging techniques compatible with screening mammography (Conference Presentation)

Jonathan Petruccelli, Porcelain He, Weiyuan Sun, Laila Hassan, Sean Starr-Baier, Danielle Hayden, Carolyn MacDonald

Proceedings Volume 10632, 106320K (2018) https://doi.org/10.1117/12.2307725

KEYWORDS: X-ray imaging, X-rays, Phase imaging, Imaging systems, Computing systems, Tissues, Signal attenuation, Mammography, Coherence imaging, X-ray optics

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Proceedings Article | 7 June 2017 Presentation

Simulations of phase imaging with polycapillary optics (Conference Presentation)

Jonathan Petruccelli, Bushra Kanwal, Carolyn MacDonald

Proceedings Volume 10187, 1018704 (2017) https://doi.org/10.1117/12.2262714

KEYWORDS: Monte Carlo methods, Phase imaging, Geometrical optics, Image quality, X-ray imaging, X-rays, Absorption, Spatial coherence, Signal attenuation, Channel projecting optics

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Proceedings Article | 1 May 2017 Presentation + Paper

Source diversity for contrast transfer function imaging

Tonmoy Chakraborty, Jonathan Petruccelli

Proceedings Volume 10222, 102220R (2017) https://doi.org/10.1117/12.2262692

KEYWORDS: Glasses, Refractive index, Liquid crystal on silicon, Spatial light modulators, Signal to noise ratio, Phase measurement, Distance measurement

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Proceedings Article | 1 May 2017 Presentation + Paper

Monte Carlo simulations of a novel coherent scatter materials discrimination system

Laila Hassan, Sean Starr-Baier, C. MacDonald, Jonathan Petruccelli

Proceedings Volume 10187, 1018706 (2017) https://doi.org/10.1117/12.2262895

KEYWORDS: Diffraction, Defense and security, Nondestructive evaluation, Absorption, Scattering, Monte Carlo methods, Imaging systems, Liquids, X-ray imaging, X-rays, Materials analysis

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Proceedings Article | 20 May 2016 Paper

Transport of intensity phase imaging using Bessel sources

Jonathan Petruccelli, Tonmoy Chakraborty

Proceedings Volume 9870, 98700C (2016) https://doi.org/10.1117/12.2222157

KEYWORDS: Phase imaging, Spatial frequencies, Phase measurement, Phase retrieval, Convolution, Bessel functions, Sensors, Spatial light modulators, Fourier transforms, Cameras

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Proceedings Article | 12 May 2016 Paper

Phase and coherent scatter imaging for improved discrimination of low-density materials

Jonathan Petruccelli, Danielle Hayden, Sean Starr-Baier, Sajjad Tahir, Mahboob Ur Rehman, Laila Hassan, C. MacDonald

Proceedings Volume 9847, 98470C (2016) https://doi.org/10.1117/12.2222937

KEYWORDS: Coherence imaging, X-rays, Imaging systems, Phase imaging, Bioalcohols, Absorption, Phase contrast, Scattering, Image processing, Sensors

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Proceedings Article | 18 March 2015 Paper

Practicable phase contrast techniques with large spot sources

Jonathan Petruccelli, Sajid Bashir, Sajjad Tahir, Bushra Kanwal, C. MacDonald

Proceedings Volume 9412, 941254 (2015) https://doi.org/10.1117/12.2082386

KEYWORDS: Sensors, Phase contrast, Image enhancement, Tissues, Geometrical optics, X-rays, Phase imaging, Signal attenuation, Tissue optics, Optics manufacturing

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Proceedings Article | 17 September 2014 Paper

Computational techniques in propagation-based x-ray phase imaging

Jonathan Petruccelli, Sajjad Tahir, Sajid Bashir, Adam Pan, Lei Tian, Ling Xu, C. MacDonald, George Barbastathis

Proceedings Volume 9209, 92090P (2014) https://doi.org/10.1117/12.2062917

KEYWORDS: Phase imaging, Phase contrast, Signal attenuation, Sensors, Spatial frequencies, Phase measurement, Phase retrieval, Geometrical optics, X-ray imaging, X-rays

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Proceedings Article | 5 September 2014 Paper

Contrast enhancement of propagation based X-ray phase contrast imaging

Adam Pan, Ling Xu, Jon Petruccelli, Rajiv Gupta, George Barbastathis

Proceedings Volume 9209, 92090R (2014) https://doi.org/10.1117/12.2060605

KEYWORDS: X-rays, Tomography, X-ray imaging, Optical spheres, Phase contrast, Arteries, Absorption, Liquids, X-ray computed tomography, Sensors

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Proceedings Article | 5 September 2014 Paper

Fourier transform image processing techniques for grid-based phase contrast imaging

Sajjad Tahir, Sajid Bashir, Jonathan Petruccelli, C. MacDonald

Proceedings Volume 9209, 920913 (2014) https://doi.org/10.1117/12.2062889

KEYWORDS: Image processing, Phase contrast, Signal to noise ratio, Absorption, Fourier transforms, Sensors, Glasses, Signal attenuation, Diffraction, X-rays

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Proceedings Article | 5 September 2014 Paper

Phase imaging using polycapillary optics

Sajid Bashir, Sajjad Tahir, Jonathan Petruccelli, C. MacDonald

Proceedings Volume 9207, 92070X (2014) https://doi.org/10.1117/12.2063229

KEYWORDS: Signal attenuation, Tissues, Sensors, Phase contrast, Optics manufacturing, Phase imaging, X-ray sources, X-ray optics, Near field optics, Absorption

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Proceedings Article | 3 November 2011 Paper

Generalized phase space representations in classical optics

Miguel Alonso, Jonathan Petruccelli, Seongkeun Cho

Proceedings Volume 8011, 80116E (2011) https://doi.org/10.1117/12.903310

KEYWORDS: Wave propagation, Particles, Geometrical optics, Radio propagation, Fourier transforms, Quantum mechanics, Systems modeling, Dispersion, Physics, Mechanics

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